Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

Repository of predicted macromolecular structure models

SwissDock

Error while retrieving the hits
Docking of small ligands into protein active sites

System Biology

MetaNetX

Metabolic network repository & analysis

Cellosaurus

Knowledge resource on cell lines

Genes & Genomes

Gene expression expertise

Evolution & Phylogeny

Orthology inference among complete genomes

OrthoDB

Ortholog evolutionary and functional annotations

Selectome

Error while retrieving the hits
Database of positive selection

Proteins & Proteomes

PROSITE

Protein family and domain database

STRING

Protein-protein interaction networks and enrichment analysis

UniProtKB

Protein sequence database

ViralZone

Fact sheets about viruses linked to sequence databases

ENZYME

Enzyme nomenclature database

HAMAP

UniProtKB family classification and annotation

MyHits

Relationships between protein sequences and motifs

SwissLipids

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Knowledge resource for lipids

VenomZone

Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins

10 resources found for raw

      • Genomics
      • , Transcriptomics
      • Software tool

    QuasR

    Quantification and analysis of Short Reads
      • Proteins & Proteomes
      • Software tool

    MELANIE

    2-D PAGE analysis
      • Systems Biology
      • Transcriptomics
      • , Genomics
      • Software tool

    CRUNCH

    Automated pipeline for ChIP-seq data analysis
      • Genes & Genomes
      • , Genomics
      • , Transcriptomics
      • Evolution & Phylogeny
      • Systems Biology
      • Database
      • Software tool

    SwissRegulon Portal

    Tools and data for regulatory genomics
      • Metagenomics
      • Software tool

    LEMMI

    Continuous benchmarking of methods for metagenomics
      • Evolution & Phylogeny
      • Software tool

    OrthoLoger

    Accurate and scalable inference of groups of orthologs
      • Metabolomics
      • Proteins & Proteomes
      • Software tool

    rawrr

    R package for fast reading Thermo Fisher Scientific MS data
      • Genes & Genomes
      • Systems Biology
      • Software tool

    CREMA

    Cis-Regulatory Element Motif Activities
      • Transcriptomics
      • Systems Biology
      • Software tool

    Cellstates

    Infering clusters of cells in scRNA-seq data
      • Transcriptomics
      • Systems Biology
      • Software tool

    Sanity

    Single-cell RNA-Seq normalization method