e.g. BLAST, UniProt, MSH6, Albumin...

OrthoLoger

  • Evolution & Phylogeny
  • Software tool
This software, used to delineate orthologs in OrthoDB, is freely available for standalone computations. It is based on pair-wise assessments of protein sequence homology between complete genomes and subsequent clustering. Orthologer includes an optional mode to perform hierarchical computation of orthology guided by a user-provided organism taxonomy.
Browse the resource website

You might also be interested in

      • Genes & Genomes
      • Evolution & Phylogeny
      • Database
      • Software tool

    SwissOrthology
    One-stop shop for orthologs
      • Evolution & Phylogeny
      • Database

    OrthoDB
    Ortholog evolutionary and functional annotations
      • Evolution & Phylogeny
      • Database
      • Software tool

    OMA
    Orthology inference among complete genomes
      • Genes & Genomes
      • Proteins & Proteomes
      • Structural Biology
      • Database

    ViralZone
    Fact sheets about viruses linked to sequence databases
      • Proteins & Proteomes
      • Database

    UniProtKB
    Protein sequence database
      • Proteins & Proteomes
      • Software tool

    HAMAP-Scan
    Scanning of protein sequences against HAMAP families
      • Genomics
      • Database

    TASmania
    Toxin-antitoxin database
      • Genomics
      • Software tool

    TASer
    Search tool associated to TASmania
      • Proteins & Proteomes
      • Software tool

    ScanProsite
    Protein sequences against PROSITE
      • Glycomics
      • Database

    SugarBind
    Pathogen Sugar-Binding Database
      • Genomics
      • Population genetics
      • Software tool

    V-pipe
    Viral genomics pipeline
      • Genomics
      • Population genetics
      • Software tool

    V-pipe SARS-CoV-2
    V-pipe pipeline for SARS-CoV-2 sequencing data
      • Text mining & Machine learning
      • Software tool

    COVTriage
    Rank the COVID-19 literature according to COVoc ontology
      • Genomics
      • Evolution & Phylogeny
      • Software tool

    Nextclade
    Clade assignment, mutation calling & QC for virus sequences
      • Genes & Genomes
      • Evolution biology
      • Software tool

    BEAST2
    Bayesian evolutionary analysis by sampling trees
      • Genomics
      • Evolution biology
      • Software tool

    GenSpectrum
    Real-time pathogen genomic sequence analysis
      • Proteins & Proteomes
      • Glycomics
      • Database

    GlyConnect
    Integrated data platform to study glycosylation
      • Genomics
      • Evolution biology
      • Software tool

    Nextstrain
    Impact of pathogen genome data on science and public health
      • Transcriptomics
      • Evolution biology
      • Software tool

    BUSCO
    From QC to gene prediction and phylogenomics
      • Metagenomics
      • Software tool

    mVIRs
    Prediction tool for inducible, bacteria-infecting viruses
      • Genomics
      • Database

    Pathoplexus
    Human viral pathogen genomic data sharing platform
      • Proteins & Proteomes
      • Database
      • Software tool

    HAMAP
    UniProtKB family classification and annotation
      • Evolution & Phylogeny
      • Software tool

    raxmlGUI
    raxmlGUI 2.0 is a graphical user interface to RAxML
      • Genomics
      • Evolution biology
      • Database

    Selectome
    Database of positive selection
      • Evolution & Phylogeny
      • Database

    Swiss-Trees
    A collection of gold standard gene phylogenies
      • Evolution & Phylogeny
      • Software tool

    Phylo.io
    A tool for visualising and comparing phylogenetic trees