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- Text mining & Machine learning
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- Database
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- Software tool
SIBiLS
Personalized information retrieval from the literature
EnzChemRED
- Proteins & Proteomes
- Database
EnzChemRED is a training and benchmarking dataset to support the development of Natural Language Processing (NLP) methods such as (large) language models that can assist enzyme curation. EnzChemRED consists of 1,210 expert curated PubMed abstracts in which enzymes and the chemical reactions they catalyze are annotated using identifiers from the UniProt Knowledgebase (UniProtKB) and the ontology of Chemical Entities of Biological Interest (ChEBI).
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SPARQL access to SIBiLS, the SIB Literature Services-
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SwissLipids
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PeptideCutter
Potential cleavage sites in a protein-
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ENZYME
Enzyme nomenclature database-
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- Systems Biology
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Rhea SPARQL endpoint
SPARQL access to the Rhea knowledgebase-
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Simulator of Human Milk Oligosaccharide synthesis-
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SwissLipids SPARQL endpoint
SPARQL access to the SwissLipids knowledgebase-
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- Proteins & Proteomes
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- Systems Biology
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- Database
MetaNetX SPARQL endpoint
SPARQL access to MetaNetX-