Structural Biology

SWISS-MODEL Repository

Protein structure homology models

ModelArchive

Repository of predicted macromolecular structure models

SwissDock

Error while retrieving the hits
Docking of small ligands into protein active sites

System Biology

MetaNetX

Metabolic network repository & analysis

Cellosaurus

Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

Error while retrieving the hits
Database of positive selection

Proteins & Proteomes

PROSITE

Protein family and domain database

STRING

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Protein-protein interaction networks and enrichment analysis

UniProtKB

Protein sequence database

ViralZone

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Fact sheets about viruses linked to sequence databases

ENZYME

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Enzyme nomenclature database

HAMAP

UniProtKB family classification and annotation

MyHits

Relationships between protein sequences and motifs

SwissLipids

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Knowledge resource for lipids

VenomZone

Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins

7 resources found for Clustering

      • Genomics
      • Software tool

    MADAP

    Clustering tool of genomic sites
      • Transcriptomics
      • Software tool

    ISA

    Finding modules in gene expression data
      • Transcriptomics
      • Software tool

    ExpressionView

    Biclusters identified in gene expression data
      • Evolution & Phylogeny
      • Software tool

    OrthoLoger

    Accurate and scalable inference of groups of orthologs
      • Genes & Genomes
      • , Genomics
      • Text mining & Machine learning
      • Database

    cancercelllines.org

    Genomic variants in human cancer cell lines
      • Proteins & Proteomes
      • Systems Biology
      • Database

    Protein Universe Atlas

    Interactive, annotated similarity network of all proteins
      • Transcriptomics
      • Systems Biology
      • Software tool

    Cellstates

    Infering clusters of cells in scRNA-seq data