Structural Biology

SWISS-MODEL Repository

Protein structure homology models

ModelArchive

Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

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Metabolic network repository & analysis

Cellosaurus

Knowledge resource on cell lines

Genes & Genomes

Bgee

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Gene expression expertise

Evolution & Phylogeny

Orthology inference among complete genomes

OrthoDB

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Ortholog evolutionary and functional annotations

Selectome

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Database of positive selection

Proteins & Proteomes

PROSITE

Protein family and domain database

STRING

Protein-protein interaction networks and enrichment analysis

UniProtKB

Protein sequence database

ViralZone

Fact sheets about viruses linked to sequence databases

ENZYME

Enzyme nomenclature database

HAMAP

UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

Portal to venom protein UniProtKB entries

Protein Universe Atlas

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Interactive, annotated similarity network of all proteins

8 resources found for Comparative genomics

      • Evolution & Phylogeny
      • Database
      • Software tool

    OMA

    Orthology inference among complete genomes
      • Genomics
      • , Transcriptomics
      • Software tool

    miRmap

    Prediction of microRNA target repression strength
      • Genes & Genomes
      • Evolution & Phylogeny
      • Database
      • Software tool

    SwissOrthology

    One-stop shop for orthologs
      • Systems Biology
      • Software tool

    OMAMO

    OMAMO allows the user to find the best simple model organism
      • Evolution & Phylogeny
      • Software tool

    Phylo.io

    A tool for visualising and comparing phylogenetic trees
      • Evolution & Phylogeny
      • Database

    Swiss-Trees

    A collection of gold standard gene phylogenies
      • Proteins & Proteomes
      • Software tool

    OMArk

    OMArk determines the quality and completeness of gene sets