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HAMAP annotation rule: MF_01369

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General rule information

Accession MF_01369
Dates 19-DEC-2006 (Created)
30-JUN-2008 (Last updated, Version 9)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
Predictors HAMAP; MF_01369_B; [distribution of match scores in UniProtKB];[seed alignment for MF_01369_B]
end case


case <OC:Archaea>
Predictors HAMAP; MF_01369_A; [distribution of match scores in UniProtKB];[seed alignment for MF_01369_A]
end case



Propagated annotation

Identifier, protein and gene names

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier RL23
Protein name
RecName: Full=50S ribosomal protein L23;
Gene name rplW

else case <OC:Cyanobacteria>
Identifier RL23
Protein name
RecName: Full=50S ribosomal protein L23;
Gene name rplW, rpl23

else case <OC:Archaea>
Identifier RL23
Protein name
RecName: Full=50S ribosomal protein L23P;
Gene name rpl23p

else case <OG:Chloroplast>
Identifier RK23
Protein name
RecName: Full=50S ribosomal protein L23, chloroplastic;
Gene name rpl23
end case

Comments

case <OC:Bacteria>
FUNCTION: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome (By similarity).

else case <OC:Archaea>
FUNCTION: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit. Contacts protein L29 (By similarity).

else case <OG:Chloroplast>
FUNCTION: Binds to 23S rRNA (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit (By similarity).
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

SIMILARITY: Belongs to the ribosomal protein L23P family.
Cross-references
PROSITE PS00050; RIBOSOMAL_L23; 1;
Pfam PF00276; Ribosomal_L23; 1;
Keywords
Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding.
Gene Ontology
GO:0006412; Biological process: translation.
GO:0019843; Molecular function: rRNA binding.

case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case



Additional information


case <OC:Bacteria>
Size range: 86-118 amino acids
end case


case <OC:Archaea>
Size range: 78-95 amino acids
end case

Related UniRules: None
Template: Q9RXK0 (RL23_DEIRA); P0ADZ0 (RL23_ECOLI); Q5SHP0 (RL23_THET8); P12732 (RL23_HALMA): [Recover all]
Scope: Bacteria
Archaea
Plastid
Fusion: Nter: None; Cter: <Unknown>
Duplicate: None
Plasmid encoded: None
Comments: Some of the Mycoplasma are fused with unknown domains. Usually encoded in plastid genomes, in spinach the bacterial ortholog has been replaced by the 80S cytosolic ortholog. The plastid-encoded gene is a pseudogene in the Caryophyllales and in EPIVI.

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UniProtKB rule member sequences



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