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HAMAP annotation rule: MF_01365

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General rule information

Accession MF_01365
Dates 6-NOV-2006 (Created)
25-SEP-2008 (Last updated, Version 11)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
Predictors HAMAP; MF_01365_B; [distribution of match scores in UniProtKB];[seed alignment for MF_01365_B]
end case


case <OC:Archaea>
Predictors HAMAP; MF_01365_A; [distribution of match scores in UniProtKB];[seed alignment for MF_01365_A]
end case



Propagated annotation

Identifier, protein and gene names

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier RL6
Protein name
RecName: Full=50S ribosomal protein L6;
Gene name rplF

else case <OC:Cyanobacteria>
Identifier RL6
Protein name
RecName: Full=50S ribosomal protein L6;
Gene name rplF, rpl6

else case <OC:Archaea>
Identifier RL6
Protein name
RecName: Full=50S ribosomal protein L6P;
Gene name rpl6p

else case <OG:Chloroplast>
Identifier RK6
Protein name
RecName: Full=50S ribosomal protein L6, chloroplastic;
Gene name rpl6
end case

Comments

case not <OG:Chloroplast>
FUNCTION: This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit (By similarity).

else
FUNCTION: Binds 23S rRNA (By similarity).
SUBUNIT: Part of the 50S ribosomal subunit (By similarity).
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

SIMILARITY: Belongs to the ribosomal protein L6P family.
Cross-references

case <OC:Bacteria> or <OG:Chloroplast>
PROSITE PS00525; RIBOSOMAL_L6_1; 1;
end case

case <OC:Archaea>
PROSITE PS00700; RIBOSOMAL_L6_2; 1;
end case

Pfam PF00347; Ribosomal_L6; 2;
PRINTS PR00059; RIBOSOMALL6; 1;
Keywords

case <FT:1>
Acetylation.
end case

Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding.
Gene Ontology
GO:0019843; Molecular function: rRNA binding.
GO:0006412; Biological process: translation.

case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Features

case <OC:Escherichia> or <OC:Shigella>
From: RL6_ECOLI (P0AG55)
Key     From     To       Description   Condition   FTGroup
MOD_RES     44     44       N6-acetyllysine (By similarity)   K  
end case



Additional information


case <OC:Bacteria>
Size range: 162-203 amino acids
end case


case <OC:Archaea>
Size range: 176-204 amino acids
end case

Related UniRules: None
Template: P02391 (RL6_BACST); P0AG55 (RL6_ECOLI); Q5SHQ3 (RL6_THET8); Q9RSL3 (RL6_DEIRA); P14135 (RL6_HALMA): [Recover all]
Scope: Bacteria
Archaea
Plastid
Fusion: Nter: None; Cter: None
Duplicate: None
Plasmid encoded: None

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UniProtKB rule member sequences



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