ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
Search for

HAMAP annotation rule: MF_01315

Send feedback new

General rule information

Accession MF_01315
Dates 16-JUN-2003 (Created)
30-JUN-2008 (Last updated, Version 23)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
Predictors HAMAP; MF_01315_B; [distribution of match scores in UniProtKB];[seed alignment for MF_01315_B]
end case


case <OC:Archaea>
Predictors HAMAP; MF_01315_A; [distribution of match scores in UniProtKB];[seed alignment for MF_01315_A]
end case



Propagated annotation

Identifier, protein and gene names

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier RS13
Protein name
RecName: Full=30S ribosomal protein S13;
Gene name rpsM

else case <OC:Cyanobacteria>
Identifier RS13
Protein name
RecName: Full=30S ribosomal protein S13;
Gene name rpsM, rps13

else case <OC:Archaea>
Identifier RS13
Protein name
RecName: Full=30S ribosomal protein S13P;
Gene name rps13p

else case <OG:Chloroplast>
Identifier RR13
Protein name
RecName: Full=30S ribosomal protein S13, chloroplastic;
Gene name rps13
end case

Comments

case <OC:Bacteria>
FUNCTION: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites (By similarity).
SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome (By similarity).

else case <OC:Archaea>
FUNCTION: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (By similarity).
SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome (By similarity).

else case <OG:Chloroplast>
FUNCTION: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA (By similarity).
SUBUNIT: Part of the 30S ribosomal subunit (By similarity).
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

SIMILARITY: Belongs to the ribosomal protein S13P family.
Cross-references
Pfam PF00416; Ribosomal_S13; 1;
PROSITE PS00646; RIBOSOMAL_S13_1; 1;
PS50159; RIBOSOMAL_S13_2; 1;
Keywords
Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding.

case <OC:Bacteria>
tRNA-binding.
end case

Gene Ontology
GO:0019843; Molecular function: rRNA binding.

case <OC:Bacteria>
GO:0000049; Molecular function: tRNA binding.
end case

GO:0006412; Biological process: translation.

case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case



Additional information


case <OC:Bacteria>
Size range: 115-137 amino acids
end case


case <OC:Archaea>
Size range: 146-227 amino acids
end case

Related UniRules: None
Template: P0A7S9 (RS13_ECOLI); P15757 (RS13_BACST); P80377 (RS13_THET8): [Recover all]
Scope: Bacteria
Archaea
Plastid
Fusion: Nter: None; Cter: None
Duplicate: in LEPBL, PSYIN
Plasmid encoded: None

View rule in raw text format (no links)




UniProtKB rule member sequences



ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot