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HAMAP annotation rule: MF_00379

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General rule information

Accession MF_00379
Dates 1-JUN-2001 (Created)
23-MAR-2009 (Last updated, Version 22)
Data class Protein
Predictors HAMAP; MF_00379; [distribution of match scores in UniProtKB];[seed alignment for MF_00379]


Propagated annotation

Identifier, protein and gene names
Identifier MNME

case <OC:Bacteria>
Protein name
RecName: Full=tRNA modification GTPase mnmE;
EC=3.6.-.-;
Gene name mnmE, trmE

else case <OG:Chloroplast>
Protein name
RecName: Full=Probable tRNA modification GTPase mnmE;
EC=3.6.-.-;
Gene name mnmE, thdF
end case

Comments
FUNCTION: Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 (By similarity).
COFACTOR: Binds 1 potassium ion per subunit (By similarity).

case <OC:Bacteria>
SUBUNIT: Homodimer (By similarity). Heterotetramer of two mnmE and two mnmG subunits (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).

else case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

SIMILARITY: Belongs to the era/mnmE GTP-binding protein family. MnmE subfamily.
Cross-references
Pfam PF01926; MMR_HSR1; 1;
PRINTS PR00326; GTP1OBG; 1;
TIGRFAMs TIGR00650; MG442; 1;
TIGR00450; mnmE_trmE_thdF; 1;
TIGR00231; small_GTP; 1;
Keywords

case <OC:Bacteria>
Cytoplasm.
end case

GTP-binding, Hydrolase, Magnesium, Metal-binding, Nucleotide-binding, Potassium, tRNA processing.
Gene Ontology
GO:0005525; Molecular function: GTP binding.
GO:0003924; Molecular function: GTPase activity.
GO:0006400; Biological process: tRNA modification.

case <OC:Bacteria>
GO:0005737; Cellular component: cytoplasm.

else case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Features
From: MNME_ECOLI (P25522)
Key     From     To       Description   Condition   FTGroup
NP_BIND     226     231       GTP (By similarity)   N-[VSAT]-G-K-S-[TSQR]  
NP_BIND     245     251       GTP (By similarity)   [TSMAD]-x(3)-G-[TSR]-T  
NP_BIND     270     273       GTP (By similarity)   D-[TS]-A-G  
NP_BIND (Optional)     335     338       GTP (By similarity)   N-K-A-D  
NP_BIND (Optional)     358     360       GTP (By similarity)   S-A-R  
 
METAL (Optional)     226     226       Potassium (By similarity)   N   1
 
METAL     230     230       Magnesium (By similarity)   S  
 
METAL (Optional)     245     245       Potassium; via carbonyl oxygen (By similarity)   [TS]   1
METAL (Optional)     247     247       Potassium; via carbonyl oxygen (By similarity)   [IVL]   1
METAL (Optional)     250     250       Potassium (By similarity)   [TS]   1
 
METAL     251     251       Magnesium (By similarity)   T  
 
BINDING     23     23       Formyltetrahydrofolate (By similarity)   [RK]   2
BINDING     80     80       Formyltetrahydrofolate (By similarity)   E   2
BINDING     120     120       Formyltetrahydrofolate (By similarity)   [RKVM]   2
BINDING     454     454       Formyltetrahydrofolate (By similarity)   K   2


Additional information

Size range: 419-550 amino acids
Related UniRules: None
Template: P25522 (MNME_ECOLI); Q9WYA4 (MNME_THEMA): [Recover all]
Scope: Bacteria
Plastid
Fusion: Nter: None; Cter: None
Duplicate: None
Plasmid encoded: None

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UniProtKB rule member sequences



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