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HAMAP annotation rule: MF_00075

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General rule information

Accession MF_00075
Dates 1-JUN-2001 (Created)
16-JUN-2008 (Last updated, Version 28)
Data class Protein
Predictors HAMAP; MF_00075; [distribution of match scores in UniProtKB];[seed alignment for MF_00075]


Propagated annotation

Identifier, protein and gene names

case not <OG:Chloroplast>
Identifier IF1
Protein name
RecName: Full=Translation initiation factor IF-1;
end case


case <OG:Chloroplast>
Identifier IF1C
Protein name
RecName: Full=Translation initiation factor IF-1, chloroplastic;
end case

Gene name infA
Comments
FUNCTION: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 (By similarity).

case not <OG:Chloroplast>
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
end case


case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

SIMILARITY: Belongs to the IF-1 family.

case <Feature:PS50832>
SIMILARITY: Contains 1 S1-like domain.
end case

Cross-references
Pfam PF00575; S1; 1;
TIGRFAMs TIGR00008; infA; 1;
PROSITE PS50832; S1_IF1_TYPE; 1; trigger=PRU00181;
Keywords

case not <OG:Chloroplast>
Cytoplasm.
end case

Initiation factor, Protein biosynthesis.

case <OC:Bacillaceae> and <FT:1>
Phosphoprotein.
end case

Gene Ontology
GO:0003723; Molecular function: RNA binding.
GO:0003743; Molecular function: translation initiation factor activity.
GO:0006413; Biological process: translational initiation.

case not <OG:Chloroplast>
GO:0005737; Cellular component: cytoplasm.
end case


case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Features

case <OC:Bacillaceae>
From: IF1_BACSU (P20458)
Key     From     To       Description   Condition   FTGroup
MOD_RES     60     60       Phosphotyrosine (By similarity)   Y  
end case



Additional information

Size range: 70-113 amino acids
Related UniRules: None
Template: P69222 (IF1_ECOLI)
Scope: Bacteria
Plastid
Fusion: Nter: None; Cter: None
Duplicate: in ACIAC, ACISJ, AZOSB, AZOSE, BORA1, BORBR, BORPA, BORPE, BURCA, BURCH, BURCM, BURMA, BURP0, BURP1, BURP6, BURPS, BURS3, BURVG, BURXL, CHRVO, DECAR, DESDG, DESVH, DESVV, LEPBL, METFK, NOVAD, POLSJ, POLSQ, RALEJ, RALME, RALSO, STRAW, SYMTH, THIDA
Plasmid encoded: in RALME, SILST
Comments: Possible wrong start in MYCSP Pseudogene in the plastid genome in most rosids (including ARATH), and Solanaceae (including TOBAC). MEDLINE=21149877; PubMed=11251102; DOI=10.1105/tpc.13.3.645; Millen R.S., Olmstead R.G., Adams K.L., Palmer J.D., Lao N.T., Heggie L., Kavanagh T.A., Hibberd J.M., Gray J.C., Morden C.W., Calie P.J., Jermiin L.S., Wolfe K.H.; "Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus."; Plant Cell 13:645-658(2001).

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UniProtKB rule member sequences



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