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HAMAP annotation rule: MF_01346

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Accession MF_01346
Dates 11-APR-2006 (Created)
25-NOV-2009 (Last updated, Version 28)
Data class Protein
Names ATP_synth_alpha_bact



Identifier ATPA

case <OC:Bacteria>
Protein name
RecName: Full=ATP synthase subunit alpha;
EC=3.6.3.14;
AltName: Full=F-ATPase subunit alpha;
AltName: Full=ATP synthase F1 sector subunit alpha;

else case <OG:Chloroplast>
Protein name
RecName: Full=ATP synthase subunit alpha, chloroplastic;
EC=3.6.3.14;
AltName: Full=F-ATPase subunit alpha;
AltName: Full=ATP synthase F1 sector subunit alpha;
end case

Gene name atpA
FUNCTION: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit (By similarity).
CATALYTIC ACTIVITY: ATP + H(2)O + H(+)(In) = ADP + phosphate + H(+)(Out).

case <OG:Chloroplast> or <Property:PHOTOSYN>
SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has four main subunits: a, b, b' and c (By similarity).

else
SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains (By similarity).
end case


case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane; Peripheral membrane protein (By similarity).

else case <OC:Cyanobacteria> and not <OC:Gloeobacter>
SUBCELLULAR LOCATION: Cellular thylakoid membrane; Peripheral membrane protein (By similarity).

else case <OC:Gloeobacter> or <Property:Membrane=2>
SUBCELLULAR LOCATION: Cell inner membrane; Peripheral membrane protein (By similarity).

else case <Property:Membrane=1>
SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein (By similarity).
end case

SIMILARITY: Belongs to the ATPase alpha/beta chains family.
PROSITE PS00152; ATPASE_ALPHA_BETA; 1;
Pfam PF00006; ATP-synt_ab; 1;
PF00306; ATP-synt_ab_C; 1;
PF02874; ATP-synt_ab_N; 1;
TIGRFAMs TIGR00962; atpA; 1;

case <OG:Chloroplast> or <Property:Thylakoid>

else case not <Property:Thylakoid> and <Property:Membrane=2>

else case <Property:Membrane=1>
end case

GO:0005524; Molecular function: ATP binding.
GO:0046933; Molecular function: hydrogen ion transporting ATP synthase activity, rotational mechanism.
GO:0042777; Biological process: plasma membrane ATP synthesis coupled proton transport.

case <Property:Thylakoid>
GO:0042651; Cellular component: thylakoid membrane.

else
GO:0005886; Cellular component: plasma membrane.
end case


case <OG:Chloroplast>
GO:0009535; Cellular component: chloroplast thylakoid membrane.
end case

From: ATPA_ECOLI (P0ABB0)
Key     From     To       Description   Condition   FTGroup
NP_BIND     169     176       ATP (By similarity)   G-D-[R,K,S]-[Q,A,K,S,G]-[T,I,C,V]-G-K-[T,S,A]  
SITE     373     373       Required for activity (By similarity)   S  



Size range: 481-670 amino acids
Related UniRules: None
Template: P0ABB0 (ATPA_ECOLI)
Scope: Bacteria
Plastid
Fusion: Nter: None; Cter: <Unknown>
Duplicate: in BURM7, BURMA, BURMS, BURP0, BURP1, BURP6, BURPS, BURTA, BURXA, BURXL, DINSH, GLUOX, HAHCH, LEGPA, LEGPC, LEGPH, LISIN, LISMF, LISMO, LISW6, MARMS, METCA, MYCPU, NITEC, NITMU, PELCD, PELLD, PELPD, PHOPR, POLNA, PSEA6, PSYIN, RHOBA, RHOFD, RHOS1, SHEFN, SYNAS, VIBHB
Plasmid encoded: in ACAM1, RHOS1, RHOS4
Comments: The second copy in some of the Burkholderia is quite a bit longer. There is a 250 residue fusion of unknown function in UREPA and UREP2.

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