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HAMAP families

The HAMAP families are a collection of orthologous microbial families manually created by expert curators. They are written in the UniRule format and contain data which is used to annotate bacterial, archaeal and plastid-encoded proteins in the UniProt/Swiss-Prot format [More details].

UniProtKB/Swiss-Prot Release 57.4 of 16-Jun-2009
UniProtKB/TrEMBL Release 40.4 of 16-Jun-2009

HAMAP families access
 e.g: MF_01200, zinc
The wildcard * is supported.

Sample family: MF_01569 (proS)
 Browse:
Hamap tools
HAMAP-Scan - advanced scan:
Scan several sequences or a whole genome (all ORFs) against the HAMAP families, with partial or complete annotation in the UniProtKB/Swiss-Prot format.
Summary Statistics
Number of HAMAP families 1590
Number of alignments 1634
Number of profiles 1662
Coverage of UniProtKB/Swiss-Prot entries 269190
Number of families by taxonomic scopes
  • Archaea: 563
  • Bacteria: 1401
  • Plastid: 154
  • Archaea only: 187
  • Archaea+Bacteria: 331
  • Archaea+Bacteria+Plastid: 45
  • Bacteria only: 918
  • Bacteria+Plastid: 107
  • Plastid only: 2
Last modified 16-Jun-2009 by COL

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