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HAMAP: Streptomyces avermitilis complete proteome

General information

Species:  Streptomyces avermitilis
Species code: STRAW
Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces (TaxID: 33903) [NEWT/ NCBI]
Description: The genus Streptomyces consists of soil and water Gram positive filamentous bacteria well known for their ability to produce complex secondary metabolites including many antibiotics. Additionally they undergo complex multicellular development, with spores germinating to form a branched, multinucleoid substrate mycelium, which then produces an aerial mycelium which septates into uninucleoid spores. Streptomyces is also unusual in having linear chromosomes with terminal inverted repeats with terminal proteins covalently bound to their 5' ends.
Streptomyces avermitilis produces secondary metabolites, one of which, avermectin, is commercially important in human and veterinary medicine.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 1
Statistics: Number of STRAW entries in the UniProt Knowledgebase: 7664 (482 in UniProtKB/Swiss-Prot + 7182 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165
Genome structure:
• Chromosome EMBL accession number BA000030 (linear; 9,025,608 bp) (download entry) (download Genome Reviews).
• Plasmid SAP1 EMBL accession number AP005645 (linear; 94,287 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=21477403; PubMed=11572948; [ NCBI , EBI , Israel , Japan ]
Omura S., Ikeda H., Ishikawa J., Hanamoto A., Takahashi C., Shinose M., Takahashi Y., Horikawa H., Nakazawa H., Osonoe T., Kikuchi H., Shiba T., Sakaki Y., Hattori M. ;
"Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.";
Proc. Natl. Acad. Sci. U.S.A. 98:12215-12220(2001).
[2] MEDLINE=22608306; PubMed=12692562; [ NCBI , EBI , Israel , Japan ]
Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T., Sakaki Y., Hattori M., Omura S. ;
"Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.";
Nat. Biotechnol. 21:526-531(2003).
Web links:
Official genome site(s):
http://avermitilis.ls.kitasato-u.ac.jp/
http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=sav_G1
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Streptomyces&GLspecies=avermitilis&GLstrain=MA4680
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid227882%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Save_MA4680
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Streptomyces_avermitilis.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p189_Str_averm
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntsa06
 EBI Proteome Analysis page



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