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HAMAP: Rhodococcus sp. (strain RHA1) complete proteome

General information

Species:  Rhodococcus sp. (strain RHA1)
Species code: RHOSR
Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Rhodococcus (TaxID: 101510) [NEWT/ NCBI]
Description: Rhodococci are aerobic, Gram positive actinomycetes of high G+C content, capable of morphological differentiation in response to their environment (e.g., cocci or filaments). These widely occurring organisms are of considerable environmental and biotechnological importance due to their broad metabolic diversity and array of unique enzymatic capabilities. These are of interest to the pharmaceutical, environmental, chemical and energy sectors. Specific applications include the desulphurization of fossil fuels and the industrial production of acrylamide. Rhodococci are well suited for bioremediation due to their capacity for long term survival in soil, their exceptional ability to degrade hydrophobic pollutants even in the presence of more readily assimilable carbon sources, and their ability to accumulate high levels of heavy metals. Rhodococcus sp. RHA1 degrades PCBs (polychlorinated biphenyl) using multiple enzyme systems (e.g., it contains at least 7 extradiol dioxygenases which are encoded on large linear plasmids and different regions of the chromosome). Strain RHA1 is well suited for field applications as it tolerates environmental stresses, survives well in soil and can be genetically manipulated.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of RHOSR entries in the UniProt Knowledgebase: 9075 (318 in UniProtKB/Swiss-Prot + 8757 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    RHA1
Genome structure:
• Chromosome EMBL accession number CP000431 (linear; 7,804,765 bp) (download entry) (download Genome Reviews).
• Plasmid pRHL1 EMBL accession number CP000432 (linear; 1,123,075 bp) (download entry) (download Genome Reviews).
• Plasmid pRHL2 EMBL accession number CP000433 (linear; 442,536 bp) (download entry) (download Genome Reviews).
• Plasmid pRHL3 EMBL accession number CP000434 (linear; 332,361 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=17030794; [ NCBI , EBI , Israel , Japan ]
McLeod M.P., Warren R.L., Hsiao W.W.L., Araki N., Myhre M., Fernandes C., Miyazawa D., Wong W., Lillquist A.L., Wang D., Dosanjh M., Hara H., Petrescu A., Morin R.D., Yang G., Stott J.M., Schein J.E., Shin H., Smailus D., Siddiqui A.S., Marra M.A., Jones S.J.M., Holt R., Brinkman F.S.L., Miyauchi K., Fukuda M., Davies J.E., Mohn W.W., Eltis L.D. ;
"The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.";
Proc. Natl. Acad. Sci. U.S.A. 103:15582-15587(2006).
Web links:
Official genome site(s):
http://www.rhodococcus.ca/
http://www.microbiology.ubc.ca/eltis/genomics.htm
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid101510%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Rhod_RHA1
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p58_Rho_rubru
 EBI Proteome Analysis page



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