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HAMAP: Escherichia coli O6 complete proteome

General information

Species:  Escherichia coli O6
Species code: ECOL6
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia (TaxID: 217992) [NEWT/ NCBI]
Description: Escherichia coli is a Gram-negative straight rod, which either uses peritrichous flagella for mobility or is nonmotile. It is a facultatively anaerobic chemoorganotroph capable of both respiratory and fermentative metabolism. E.coli serves a useful function in the body by suppressing the growth of harmful bacterial species and by synthesising appreciable amounts of vitamins. It is an important component of the biosphere. It colonizes the lower gut of animals and survives when released to the natural environment, allowing widespread dissemination to new hosts. Pathogenic E.coli strains are responsible for infection of the enteric, urinary, pulmonary and nervous systems. Uropathogenic strains of Escherichia coli (UPEC) are the most common cause of non-hospital-acquired urinary tract infections, responsible for 70-90% of the 7 million cases of acute cystitis and 250,000 cases of pyelonephritis reported annually in the United States.
Strain O6:H1:K? belongs to phylogroup B2. It was isolated at the University of Maryland Hospital.
Properties: Presence of flagella: Yes
Human pathogen: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of ECOL6 entries in the UniProt Knowledgebase: 5336 (1667 in UniProtKB/Swiss-Prot + 3669 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    O6:H1 / CFT073 / ATCC 700928 / UPEC
Genome structure:
Chromosome EMBL accession number AE014075 (circular; 5,231,428 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=22388234; PubMed=12471157; [ NCBI , EBI , Israel , Japan ]
Welch R.A., Burland V., Plunkett G. III, Redford P., Roesch P., Rasko D., Buckles E.L., Liou S.-R., Boutin A., Hackett J., Stroud D., Mayhew G.F., Rose D.J., Zhou S., Schwartz D.C., Perna N.T., Mobley H.L.T., Donnenberg M.S., Blattner F.R. ;
"Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.";
Proc. Natl. Acad. Sci. U.S.A. 99:17020-17024(2002).
Web links:
Official genome site(s):
http://www.genome.wisc.edu/sequencing/upec.htm
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Escherichia&GLspecies=coli&GLstrain=CFT073
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid217992%5Borgn%5D
ERIC: http://www.ericbrc.org/portal/eric/ecolicft073
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Ecol_CFT073
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Escherichia_coli.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p313_Esc_coli
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntec04
 EBI Proteome Analysis page



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