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HAMAP: Acidobacteria bacterium (strain Ellin345) complete proteome

General information

Species:  Acidobacteria bacterium (strain Ellin345)
Species code: ACIBL
Taxonomy: Bacteria; Acidobacteria; Candidatus Koribacter (TaxID: 204669) [NEWT/ NCBI]
Description: Acidobacteria bacterium (strain Ellin345) is an aerobic, mesophilic, chemo-organotroph Gram-negative bacterium isolated from soil in ryegrass grass/clover pasture in Australia. A. bacterium is able to use a variety of carbon sources that span simple sugars to more complex substrates such as hemicellulose, cellulose, and chitin. It is capable of nitrate and nitrite reduction, but not N2 fixation or denitrification. It plays an important role in iron redox reactions and important contributions to the terrestrial carbon cycle. The presence of cellulose synthesis genes and a large class of novel high-molecular-weight excreted proteins suggests potential traits for desiccation resistance, biofilm formation, and/or contribution to soil structure. (adapated from PMID: 19201974).
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of ACIBL entries in the UniProt Knowledgebase: 4771 (250 in UniProtKB/Swiss-Prot + 4521 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    Ellin345
Genome structure:
Chromosome EMBL accession number CP000360 (circular; 5,650,368 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=19201974; [ NCBI , EBI , Israel , Japan ]
Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M., DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. ;
"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.";
Appl. Environ. Microbiol. 75:2046-2056(2009).
Web links:
Official genome site(s):
http://genome.jgi-psf.org/aciel/aciel.home.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Acidobacteria&GLspecies=bacterium&GLsupStrain=Ellin345
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid204669%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Abac_ELLIN345
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p15771_Aci_bacte
 EBI Proteome Analysis page



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