V-pipe SARS-CoV-2

  • Population genetics
  • Transcriptomics
  • Software tool
We have released a new version of V-pipe specifically adapted to analyze high-throughput sequencing data of SARS-CoV-2. The V-pipe sars-cov2 branch is continuously updated with improvements and extensions, including on the visualization and reporting of results.

This resource supports COVID-19 / SARS-CoV-2 research.
Browse the resource website

You might also be interested in

      • Proteins & Proteomes
      • Database

    ViralZone

    Fact sheets about viruses linked to sequence databases
      • Glycomics
      • Database

    SugarBind

    Pathogen Sugar-Binding Database
      • Genomics
      • Database

    OpenFlu

    Database for human and animal influenza virus
      • Population genetics
      • Transcriptomics
      • Software tool

    V-pipe

    Viral genomics pipeline
      • Proteins & Proteomes
      • Systems Biology
      • Database

    STRING-covid

    New COVID-19 oriented version of the STRING database
      • Text mining & Machine learning
      • Software tool

    COVTriage

    Rank the COVID-19 literature according to COVoc ontology
      • Genomics
      • Population genetics
      • , Evolution biology
      • Software tool

    Nextclade

    Clade assignment, mutation calling & QC for virus sequences
      • Evolution biology
      • Genes & Genomes
      • Software tool

    BEAST2

    Bayesian evolutionary analysis by sampling trees
      • Genes & Genomes
      • Evolution biology
      • Software tool

    GenSpectrum

    Real-time pathogen genomic sequence analysis