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Showing 10 records out of 10 total

Categories: proteomics, (post-translational modification) - Software type(s): website - tool
DAS (Dense Alignment Surface) is based on low-stringency dot-plots of the query sequence against a set of library sequences - non-homologous membrane proteins - using a previously derived, special scoring matrix. The method provides a high precision hyrdophobicity profile for the query from which the location of the potential transmembrane segments can be obtained. The novelty of the DAS-TMfilter algorithm is a second prediction cycle to predict TM segments in the sequences of the TM-library.
Categories: proteomics - Software type(s): website - database/tool
Set of bioinformatics tools, databases and courses
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
Prediction of transmembranes helices and topology of proteins.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
Prediction of transmembrane topology and signal peptides from the amino acid sequence of a protein.
Categories: proteomics, (protein characterisation and function, families, patterns and profiles, post-translational modification, protein-protein interaction) - Software type(s): website - tool
PredictProtein integrates feature prediction for secondary structure, solvent accessibility, transmembrane helices, globular regions, coiled-coil regions, structural switch regions, B-values, disorder regions, intra-residue contacts, protein-protein and protein-DNA binding sites, sub-cellular localization, domain boundaries, beta-barrels, cysteine bonds, metal binding sites and disulphide bridges.
Categories: proteomics, (protein characterisation and function, post-translational modification) - Software type(s): website - tool
Classification and Secondary Structure Prediction of Membrane Proteins.
Categories: proteomics, (post-translational modification) - Software type(s): website - tool
TMHMM is a membrane protein topology prediction method based on a hidden Markov model (HMM). It predicts transmembrane helices in proteins.
Categories: proteomics, (protein structure) - Software type(s): website, CLI - tool
The TMpred program makes a prediction of membrane-spanning regions and their orientation. The algorithm is based on the statistical analysis of TMbase, a database of naturally occurring transmembrane proteins
Categories: proteomics, (protein sequences and identification, protein characterisation and function, similarity search/alignment) - Software type(s): website - database
The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins with accurate, consistent and rich annotation. It consists of: UniProtKB/Swiss-Prot (manually-annotated records and curator-evaluated computational analysis) and UniProtKB/TrEMBL (computationally analyzed records awaiting manual annotation).
Categories: proteomics, (protein sequences and identification, protein characterisation and function, post-translational modification, protein-protein interaction) - Software type(s): website - database
UniProtKB/Swiss-Prot is the manually annotated component of UniProtKB. It contains manually-annotated (reviewed) records with information extracted from the literature and curator-evaluated computational analysis.