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Showing 20 records out of 36 total
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Categories: proteomics, (similarity search/alignment), genomics, (sequence alignment) - Software type(s): website - tool
Four tools for multiple alignments.
Categories: proteomics, (similarity search/alignment) - Software type(s): website - tool
BLAST sequence similarity search (blastp or tblastn) against UniProtKB or taxonomic subdivisions, complete proteomes, UniRef, PDB, EMBL, ESTs
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment) - Software type(s): website - tool
BLAST sequence similarity search against UniProtKB or taxonomic subdivisions, complete proteomes, UniRef, PDB or UniParc - on the UniProt web site.
keywords: sequence alignment
Categories: similarity search/alignment, similarity search - Software type(s): website - tool
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
keywords: sequence alignment
Categories: similarity search/alignment, similarity search - Software type(s): website - tool
BLAST search on protein sequence databases
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment) - Software type(s): website - tool
Align two or more protein sequences on the UniProt web site using ClustalOmega.
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment), genomics, (sequence alignment) - Software type(s): website, CLI, GUI - tool
Multiple alignment of nucleic acid and protein sequences.
Categories: proteomics, (similarity search/alignment), genomics, (sequence alignment) - Software type(s): website - tool
ClustalW is a general purpose multiple sequence alignment program for DNA or proteins
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment, sequence alignment) - Software type(s): website - tool
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.
keywords: sequence alignment
Categories: similarity search/alignment, sequence alignment - Software type(s): website - tool
While standard alignment methods rely on comparing single residues and imposing gap penalties, DIALIGN constructs pairwise and multiple alignments by comparing entire segments of the sequences. No gap penalty is used. This approach can be used for both global and local alignment, but it is particularly successful in situations where sequences share only local homologies.
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment) - Software type(s): website - tool
Diagonal plots to graphically compare of biological sequences and identify regions of close similarity
keywords: sequence alignment
Categories: proteomics - Software type(s): website - database/tool
Set of bioinformatics tools, databases and courses
Categories: similarity search/alignment, similarity search - Software type(s): website - tool
This tool provides sequence similarity searching against protein databases using the FASTA suite of programs. FASTA provides a heuristic search with a protein query. FASTX and FASTY translate a DNA query. Optimal searches are available with SSEARCH (local), GGSEARCH (global) and GLSEARCH (global query, local database).
keywords: sequence alignment
Categories: genomics - Software type(s): CLI - tool
Tagger and fetchGWI are tools which allow searching short sequence tags against entire genomes or mRNA reference sequence databases.
Categories: proteomics, (families, patterns and profiles) - Software type(s): website - tool
The program scans a protein sequence against the PRINTS Protein Fingerprint Database.
Categories: proteomics, (similarity search/alignment), genomics, (sequence alignment) - Software type(s): website - tool
Kalign is a fast and accurate multiple sequence alignment algorithm.
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment), genomics, (sequence alignment) - Software type(s): website - tool
Kalign is a fast and accurate multiple sequence alignment algorithm.
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment, sequence alignment) - Software type(s): website - tool
MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program.
keywords: sequence alignment
Categories: proteomics, (similarity search/alignment), genomics, (sequence alignment) - Software type(s): website - tool
MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program.
keywords: sequence alignment
Categories: similarity search/alignment, sequence alignment - Software type(s): website - tool
Multiple alignment server
keywords: sequence alignment
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