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Showing 15 records out of 15 total

Categories: proteomics, (protein sequences and identification, mass spectrometry and 2-DE data) - Software type(s): website - tool
Protein identification by amino acid composition, and optionally pI, Mw, species, UniProtKB keyword and calibration protein. Several constellations are available, corresponding to various amino acid analysis techniques.
Categories: proteomics, (protein characterisation and function) - Software type(s): website - tool
Compare amino acid composition of a UniProtKB entry with some or all other UniProtKB entries. Several constellations are available, corresponding to various amino acid analysis techniques.
Categories: proteomics, (protein characterisation and function) - Software type(s): website - tool
Compute the theoretical pI (isoelectric point) and Mw (molecular weight) for a list of UniProt Knowledgebase (Swiss-Prot or TrEMBL) entries or for user entered sequences
Categories: proteomics, (protein sequences and identification, similarity search/alignment), genomics, (sequence alignment) - Software type(s): website - tool
Redundancy reduction in a set of aligned or unaligned sequences
Categories: proteomics, (protein characterisation and function) - Software type(s): website - tool
GPMAW lite is a protein bioinformatics tool to perform basic bioinformatics calculations on any protein amino acid sequence, including predicted molecular weight, molar absorbance and extinction coefficient, isoelectric point and hydrophobicity index, as well as amino acid composition and protease digest.
Categories: proteomics, (protein sequences and identification, protein characterisation and function) - Software type(s): website - database
neXtProt is an innovative knowledge platform dedicated to human proteins. This resource contains a wealth of high-quality data on all the human proteins that are produced by the 20'000 protein-coding genes found in the human genome. The content of neXtProt is continuously extended so as to provide many more carefully selected data sets and analysis tools.
Categories: proteomics - Software type(s): website - tool
One to Three converts single letter translations to three letter translations.
Categories: proteomics - Software type(s): website - tool
PepDraw is a tool to draw peptide primary structure and calculate theoretical properties.
Categories: proteomics, (protein characterisation and function) - Software type(s): website - tool
The PoPS project is a set of computational tools for investigating protease specificity. The main PoPS program allows users to model and profile protease specificity and predict substrate cleavage. Other tools are available to search for substrates within proteomes (protein databases for organisms), and create simple matrix models of specificity from experimental data.
Categories: proteomics - Software type(s): website - tool
Protein Colourer is a tool for colouring amino acid sequences. The default settings will colour the sequence by the hydrophobicity of the amino acids. You can set the colouring scheme by changing the lists associated with each colour.
Categories: proteomics, (protein characterisation and function) - Software type(s): website - tool
Compute various physical and chemical parameters for a given protein sequence. The computed parameters include the molecular weight, theoretical pI (isoelectric point), amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity (GRAVY).
Categories: proteomics - Software type(s): website - tool
Three to One converts three letter translations to single letter translations
Categories: proteomics - Software type(s): website - tool
This tool can convert 3-letter amino acid codes to 1-letter amino acid codes and inversely.
Categories: proteomics, (protein sequences and identification, protein characterisation and function, similarity search/alignment) - Software type(s): website - database
The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins with accurate, consistent and rich annotation. It consists of: UniProtKB/Swiss-Prot (manually-annotated records and curator-evaluated computational analysis) and UniProtKB/TrEMBL (computationally analyzed records awaiting manual annotation).
Categories: proteomics, (protein sequences and identification, protein characterisation and function, post-translational modification, protein-protein interaction) - Software type(s): website - database
UniProtKB/Swiss-Prot is the manually annotated component of UniProtKB. It contains manually-annotated (reviewed) records with information extracted from the literature and curator-evaluated computational analysis.