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Showing 3 records out of 3 total

Categories: phylogeny/evolution, transcriptomics - Software type(s): website - database
Bgee is a database to compare expression patterns between animal species. Bgee addresses difficulties such as complex anatomies and diverse sources of data by the use of ontologies and the explicit representation of homology. Homology relationships are defined both between genes and between anatomical features. The main efforts are the annotation of anatomical and developmental terms and their homology relationships, and the annotation and statistical treatment of transcriptome data.
Categories: systems biology - Software type(s): databases files, website - database
The cellosaurus is a thesaurus of cell lines. It attempts to list all cell lines used in biomedical research, including immortalized cell lines, naturally immortal cell lines (ie stem cell lines), finite life cell lines when those are distributed and widely used, vertebrate cell lines with an emphasis on human, mouse and rat cell lines, and invertebrate (insect and tick) cell lines.
Categories: proteomics, (post-translational modification), genomics, (characterisation/annotation), systems biology, transcriptomics - Software type(s): GUI, website - tool
MARA models genome-wide expression data in terms of our genome-wide annotations of regulatory sites. For a given expression data-set it infers the key transcription regulators, their sample-dependent activities, and their genome-wide targets.