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PROSITE entry PS52016


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS52016
Entry name [info] TONB_DEPENDENT_REC_3
Accession [info] PS52016
Entry type [info] MATRIX
Date [info] 03-MAY-2023 CREATED;
03-MAY-2023 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00354
Associated ProRule [info] PRU01360

Name and characterization of the entry

Description [info] TonB-dependent receptor (TBDR) proteins profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=702;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=697;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8643253; R2=0.0184584; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=387; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=252; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-7; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 126 in 126 different sequences
Number of true positive hits 126 in 126 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] TBDR plug
Feature key [info] DOMAIN
Feature description [info] TBDR beta-barrel
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
126 sequences

BFRD_BORPE  (P81549), BHUA_BRUA2  (Q2YJB2), BHUA_BRUAB  (Q576D7), 
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PDB
[Detailed view]
78 PDB

1BY3; 1BY5; 1FCP; 1FEP; 1FI1; 1KMO; 1KMP; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ;
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