PROSITE entry PS51884

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General information about the entry

PURL [info]	https://purl.expasy.org/prosite/signature/PS51884
Entry name [info]	CHAPLIN
Accession [info]	PS51884
Entry type [info]	MATRIX
Date [info]	10-APR-2019 CREATED; 10-APR-2019 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC51884
Associated ProRule [info]	PRU01232

Name and characterization of the entry

Description [info]

Chaplin domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=41;
/DISJOINT: DEFINITION=PROTECT; N1=5; N2=37;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5298569; R2=0.0080471; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1426; N_SCORE=14.0; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=494; N_SCORE=6.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-34; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;

...

                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='S';  M=-17,-69, 37,-55,-74, 15,-59,-67,-57,-33,-66, 26,-17, -8,-32, 73, -4, -6,-84,-68;
/M: SY='P';  M= -3,-78,  2,-10,-32, 50, 43,-77,-28,-78,-69, 21, 74,-59,-27,-10,-59,-43,-80,-69;
/M: SY='G';  M=-28,-73,-24,-70,-79, 90,-69,-80,-66,-80,-72,-49,-67,-63,-73, 32,  2,-29,-77,-74;
/M: SY='V';  M= 12,-68,-29,-73,-15,-78,-78, 37,-73, 21,-42,-73,-76,-72,-75,-63,  4, 73,-80,-59;
/M: SY='L';  M= 37,-67,-76,-71,-54,  9,-72,  6,-71, 53,-42,-70,-75,-68,-73,-21,-12, 32,-76,-61;
/M: SY='S';  M= 30, 15,-13,-59,-76, 21,-62,-74,-60,-76,-69,-18,-65,-53,-65, 87,-21,-65,-81,-69;
/M: SY='G';  M=-19,-76,-21,-73,-83,101,-70,-89,-69,-85,-75,-50,-68,-67,-76,-49,-67,-82,-74,-77;
/M: SY='N';  M=-24,-68, 24,-54,-75,-53,-46,-73,-50,-44,-68,115,-71,-52,-58,-45, 11,-74,-94,-71;
/M: SY='Q';  M=  8,-74, -1, -9,-74,-67,-57,-56,-49,-36,-57, 15, -6, 90, -1,-27, 10, 33,-79,-64;
/M: SY='V';  M= 20,-66,-79,-74,-54,-77,-79, 19,-73, 17,-42,-74,-76,-72,-75,-32,-20, 82,-82,-61;
/M: SY='Q';  M= -7,-76, 30, -5,-75,-31,-54, -1, -1,-66,-59, 39,-68, 89,-28,-15,-56,  7,-78,-19;
/M: SY='V';  M= 48,-67,-76,-71, 10, -1,-75, 23,-70,  2,-12,-69,-74,-69,-73,-16,-54, 58,-75,-59;
/M: SY='P';  M=  2,-87, -4, -9,-85,-66,-68,-74,-61,-82,-70,-68,119,-63,-72,-29,-58,-76,-80,-81;
/M: SY='I';  M= 14,-71,-21,-74,-53,-80,-80, 73,-74,  1,-41,-73,-75,-72,-77,-64,-20, 59,-79,-60;
/M: SY='H';  M=-30,-74, 72,-24,-37,-32, 82,-46,-55,-75,-67, 56,-68,-10,-59,  9, 17,-74,-93,-59;
/I:         I=-30; MD=-77;
/M: SY='V';  M= 38,-68,-79,-74, -3,-74,-78, 40,-73, 20,-44,-73,-76,-72,-75,-61, -3, 59,-77,-59; D=-30;
/I:         I=-30; MI=-77; IM=-77; DM=-77;
/M: SY='P';  M=  5,-87,-24,  6,-85,-41,-67,-74,-60,-81,-70,-68,117,-12,-71,-60,-59,-76,-79,-80;
/M: SY='V';  M= 15,-69,-77,-70,-57,-77,-78, 40,-32, -8,-44,-71, -1, -3,-71,-61,  1, 75,-81,-62;
/M: SY='N';  M=-62,-72, 49,  8,-77,-57,  7,-77,-49,-80,-69,101,-69, 33,-56,-18,-18,-77,-89,-15;
/M: SY='V';  M= 14,-68,-77,-73,-21,-36,-78, 30,-72,  7,-44,-23,-13,-72,-75,-62,-10, 76,-81,-61;
/M: SY='C';  M=-58,144,-76,-76,-70,-74,-77,-71,-72,-67,-67,-64,-86,-77,-34,  8,  0,-14,-97,-78;
/M: SY='G';  M=-50,-76,-14,-72,-82, 98,-68,-89,-67,-86,-75, 13,-68,-65,-75,-20,-65,-83,-76,-77;
/M: SY='N';  M=-62,-70, 41,-53,-70,-59,-50,-31,-53,  0,-60,100,-73, 20,-60,-24,-19,  0,-90,-67;
/M: SY='S';  M= 54,-65,-61,-59,-73, -8,-11,-65,-59,-69,-63,-19,-19,  0,-64, 62, 39,-14,-81,-67;
/M: SY='V';  M= 21,-68,-80,-75,-16, -1,-79, 37,-73, 14,-43,-73,-76,-73,-76,-62,-55, 72,-78,-60;
/M: SY='S';  M= 34,-69, 26,-56,-76, 39,  7,-75, -1,-53,-68, 36,-67,-55,-33, 44,  7,-68,-82,-69;
/M: SY='V';  M= 27,-67,-78,-74,  4,-22,-77, 20,-72, 20,-43,-25,-77,-72,-74,-62,-54, 73,-78,-58;
/M: SY='V';  M= -3,-70,-32,-74,-15,  6,-77, 51,-74, 29,-42,-71,-25,-72,-76,-64,-16, 55,-77,-59;
/M: SY='G';  M= 31,-71,-16,-67,-79, 82,-68,-36,-66,-78,-70,-51,-67,-62,-72, 28,-15,-70,-76,-74;
/M: SY='A';  M= 34,-68, -4,-40, -2, 11,-69, 18,-67, 17,-51,-62,-71,-64,-71, 25, -1, 26,-74, -7;
/M: SY='L';  M= 36,-68,-68,-65, -6,-14, 24,-50,-64, 51,-10, 10,-74,-12,-18, 21,-25,-30,-75,-57;
/M: SY='N';  M=-13, -3, 42,-26,-75,-15, 24,-17,-10,-73,-66, 78,-69, -2,-58, 34, -2,-27,-89,-67;
/M: SY='P';  M= 42, -5,  1,-57,-77, 10,-13,-66,-61,-72,-65,-17, 72, -2,-68, 18, 15, -5,-81,-72;
/M: SY='A';  M= 65,-66, -6,  7,-74,  8,-65,-62,-29,-68,-63, 18,-23,-57,-64, -7, 29,  6,-80,-70;
/M: SY='C';  M= 12, 77,-68,  4, 62, 11,-67,-58,-40, -1, -9,-19,-75,-67,-70,  7,-24,-14,-66,-14;
/M: SY='G';  M= 16, 22, 41,-11,-78, 70,-65,-41,-61,-75,-69,  2,-68,-19,-22,-50, -6,-16,-81,-73;
/M: SY='N';  M=-16, -8, 14,-11,-77, 18,-54,-74, 12,-77,-68, 86,-67,-29,-57, -3, 44,-70,-87,-70;
/M: SY='G';  M= 17, 13,-62, -9,-71, 40, 15, -8,-13,-66,-61,-54,-68,-58,  9, 32, 30, 16,-80,-67;
/M: SY='C';  M= 15,121,-70,-70,-71, 10, -7,-38,-35,-53,-64,-24,-20,-70,-73,  4, 20,-14,-89,-73;
/M: SY='V';  M= 33, -4,  7, 19,-70, 26,-68,-10,-16,-38,-59,-57,-67,-24,-42,  2, 22, 34,-81,-68;
/M: SY='N';  M= 29,  2, 15,-29,-73, 10,-59,-36,-29,-69,-63, 72,  5,-32,-64,-22, 25, 14,-86,-70;
/I:         E1=0; IE=-255; DE=-255;

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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.

Total number of hits	11 in 8 different sequences
Number of true positive hits	11 in 8 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	2
Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Feature key [info]	DOMAIN
Feature description [info]	Chaplin
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

8 sequences

CHPA_STRCO  (Q8CJY7), CHPB_STRCO  (Q9X7U2), CHPC_STRCO  (Q9AD93),

CHPD_STRCO  (Q9L1J9), CHPE_STRCO  (Q9X9Z2), CHPF_STRCO  (Q9KYG7), 
CHPG_STRCO  (Q9KYH3), CHPH_STRCO  (Q9AD92)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment