PROSITE entry PS51257

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General information about the entry

PURL [info]	https://purl.expasy.org/prosite/signature/PS51257
Entry name [info]	PROKAR_LIPOPROTEIN
Accession [info]	PS51257
Entry type [info]	MATRIX
Date [info]	01-AUG-2006 CREATED; 01-SEP-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00013
Associated ProRule [info]	PRU00303

Name and characterization of the entry

Description [info]

Prokaryotic membrane lipoprotein lipid attachment site profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=35; TOPOLOGY=LINEAR;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=35;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0; R2=1.0; TEXT='RScore';
/CUT_OFF: LEVEL=0; SCORE=5; N_SCORE=5.0; MODE=1; TEXT='*';
/CUT_OFF: LEVEL=-1; SCORE=1; N_SCORE=1.0; MODE=1; TEXT='*';
/DEFAULT: D=*; I=*; B0=*; B1=*; E0=*; E1=*; MD=0; DM=0; M0=*;

...

                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B0=0; B1=*;
/M:         M=  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  0,  *,  *,  *,  *,  *,  *,  *,  *,  *;
/M:         M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0; D=0;
/M:         M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0; D=0;
/M:         M=  0,  0,  0,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0,  1,  0,  0,  0,  0,  0; D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M: D=0;
/M:         M=  0,  0,  *,  *,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  *,  *,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  *,  *,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  *,  *,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  *,  *,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0;
/M:         M=  0,  0,  *,  *,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0,  *,  0,  0,  0,  0,  0;
/M:         M=  1,  *,  *,  *,  1,  1,  *,  1,  *,  1,  1,  *,  *,  *,  *,  1,  1,  1,  1,  *;
/M:         M=  1,  *,  *,  *,  1,  1,  *,  1,  *,  1,  1,  *,  *,  *,  *,  1,  1,  1,  1,  *;
/M:         M=  1,  1,  *,  *,  1,  1,  *,  1,  *,  1,  1,  *,  *,  1,  *,  1,  1,  1,  *,  1;
/M:         M=  1,  *,  *,  *,  *,  1,  *,  *,  *,  *,  *,  *,  *,  *,  *,  1,  *,  *,  *,  *;
/M:         M=  *,  0,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *,  *;
/I:         E0=0; E1=0;

» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.

Total number of hits	3'041 in 3'041 different sequences
Number of true positive hits	2'146 in 2'146 different sequences
Number of 'unknown' hits	231 in 231 different sequences
Number of false positive hits	664 in 664 different sequences
Number of false negative sequences	127
Number of 'partial' sequences	5

Precision (true positives / (true positives + false positives))	76.37 %
Recall (true positives / (true positives + false negatives))	94.41 %

Comments [info]

Taxonomic range [info]	Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Matrix type [info]	localization_signal
Scaling database [info]	none
Author [info]	N_Hulo
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	2146 sequences 17KD_RICAM (P50927), 17KD_RICAU (P50928), 17KD_RICBE (Q84I68), » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	127 sequences ALGK_PSEAE (P96956), BAMB_ALTNA (F5ZAY7), BAMB_KANKD (C7R5S3), » more
UniProtKB/Swiss-Prot 'Partial' sequences	5 sequences 17KD_RICCA (P29697), BMPA_BORAF (P0C223), HPAA4_HELPX (Q48244), » more
UniProtKB/Swiss-Prot 'Unknown' sequences	231 sequences AGAB_VIBS7 (P48840), AMO_KLEM8 (P80695), ARS_PSEVC (P28607), » more
UniProtKB/Swiss-Prot False positive sequences	664 sequences AFAC_ECOLX (P53517), ALDC_METMA (Q8PZ55), AMPC_ECOLI (P00811), » more
PDB [Detailed view]	149 PDB 1FFT; 1W7F; 2F2F; 2JBL; 3BMX; 3E78; 3E79; 3EKI; 3J6D; 3KRN; 3NVD; 3PPN; » more