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PROSITE entry PS51184


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51184
Entry name [info] JMJC
Accession [info] PS51184
Entry type [info] MATRIX
Date [info] 01-FEB-2006 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51183
Associated ProRule [info] PRU00538

Name and characterization of the entry

Description [info] JmjC domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=161;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=156;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8866572; R2=0.0079286; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=26042.3710938; R2=5.3107991; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=1150; H_SCORE=32150; N_SCORE=11.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=582; H_SCORE=29133; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-23; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
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Post-processing [info]

PROMOTED_BY PS51183

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 215 in 215 different sequences
Number of true positive hits 215 in 215 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.54 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] JmjC
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
215 sequences

CBFA_DICDI  (O97101), ECM5_YEAST  (Q03214), ELF6_ARATH  (Q6BDA0), 
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UniProtKB/Swiss-Prot
False negative sequences
1 sequence

DPY21_CAEEL (Q9GRZ3)

		
PDB
[Detailed view]
691 PDB

1H2K; 1H2L; 1H2M; 1H2N; 1IZ3; 1MZE; 1MZF; 1VRB; 1YCI; 2CGN; 2CGO; 2GP3;
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