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PROSITE entry PS51129


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51129
Entry name [info] PDXS_SNZ_2
Accession [info] PS51129
Entry type [info] MATRIX
Date [info] 01-JUN-2005 CREATED;
07-APR-2021 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00949
Associated ProRule [info] PRU00481

Name and characterization of the entry

Description [info] PdxS/SNZ family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=286;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=281;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.0583370; R2=0.0065660; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=28796.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=829; H_SCORE=28796; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=525; H_SCORE=28796; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-65; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 212 in 212 different sequences
Number of true positive hits 212 in 212 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
212 sequences

PDX11_ARATH (O80448), PDX11_ORYSJ (Q69LA6), PDX12_ARATH (Q9ZNR6), 
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PDB
[Detailed view]
37 PDB

1ZNN; 2ISS; 2NV1; 2NV2; 2YZR; 2ZBT; 3FEM; 3O05; 3O06; 3O07; 4ADS; 4ADT;
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