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PROSITE entry PS50985


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50985
Entry name [info] GRAS
Accession [info] PS50985
Entry type [info] MATRIX
Date [info] 01-MAY-2004 CREATED;
20-DEC-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50985
Associated ProRule [info] PRU01191

Name and characterization of the entry

Description [info] GRAS family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=380;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=375;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0003932; R2=0.0156340; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=480; N_SCORE=9.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=288; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-75; I=-75; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 79 in 79 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] GRAS
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

CIGR1_ORYSJ (Q69VG1), CIGR2_ORYSJ (Q8GVE1), DELA1_MEDTR (A0A396IUP1), 
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PDB
[Detailed view]
5 PDB

5B3G; 5B3H; 5HYZ; 6KPB; 6KPD