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PROSITE entry PS50206


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50206
Entry name [info] RHODANESE_3
Accession [info] PS50206
Entry type [info] MATRIX
Date [info] 01-NOV-2002 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00322
Associated ProRule [info] PRU00173

Name and characterization of the entry

Description [info] Rhodanese domain profile.
Matrix / Profile [info] 
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=118;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=118;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=7.1092110; R2=0.0001337; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=694130.8125000; R2=1.8906065; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=10403; H_SCORE=713799; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=-4556; H_SCORE=685517; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: B0=*; B1=*; E0=*; E1=*; MM=*; II=*;

...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 984 in 943 different sequences
Number of true positive hits 984 in 943 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.39 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] Rhodanese
Version [info] 7

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 943 sequences 

ACR21_ORYSJ (Q336V5), ACR22_ORYSJ (Q10SX6), ARR2_YEAST  (Q06597),
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UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

DUSPR_DICDI (Q556Y8), STR4A_ARATH (Q56XR7), STR4_ARATH  (Q9M158),
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PDB
[Detailed view]		 77 PDB

1BOH; 1BOI; 1C25; 1CWR; 1CWS; 1CWT; 1DP2; 1E0C; 1GMX; 1GN0; 1H4K; 1H4M;
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