PROSITE logo

PROSITE entry PS50075


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50075
Entry name [info] CARRIER
Accession [info] PS50075
Entry type [info] MATRIX
Date [info] 01-NOV-1997 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00012
Associated ProRule [info] PRU00258

Name and characterization of the entry

Description [info] Carrier protein (CP) domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=76;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=71;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3638065; R2=0.0079237; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=9446.0000000; R2=3.3255813; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=775; H_SCORE=12023; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=523; H_SCORE=11185; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-36; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 2'025 in 1'454 different sequences
Number of true positive hits 2'025 in 1'454 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 21
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.97 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 13
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] Carrier
Version [info] 7

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
1454 sequences

5MOAS_ASPTN (Q0CRQ5), AACP1_BRADU (Q89VT6), AACP2_BRADU (Q89GR1), 
» more

UniProtKB/Swiss-Prot
False negative sequences
21 sequences

5MOAR_ASPTN (Q0CRQ4), ANUA_PENRF  (W6QDA2), BET1_NEOBT  (A0A0C6E0I7), 
» more

PDB
[Detailed view]
363 PDB

1ACP; 1AF8; 1DNY; 1DV5; 1F80; 1FH1; 1HQB; 1HY8; 1KLP; 1L0H; 1L0I; 1NQ4;
» more