PROSITE logo

PROSITE entry PS00344


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS00344
Entry name [info] GATA_ZN_FINGER_1
Accession [info] PS00344
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00300

Name and characterization of the entry

Description [info] GATA-type zinc finger domain.
Pattern [info] 
C-x-[DNEHQSTI]-C-x(4,6)-[ST]-x(2)-[WM]-[HR]-[RKENAMSLPGQT]-x(3,4)-[GNEP]-
x(3,6)-C-[NES]-[ASNR]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 186 in 137 different sequences
Number of true positive hits 186 in 137 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.30 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 2
Site [info] zinc at position 1
Site [info] zinc at position 4
Site [info] zinc at position 14
Site [info] zinc at position 17
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 137 sequences 

AMS2_SCHPO  (Q9URT4), AREA_ASPNG  (O13412), AREA_ASPOR  (O13415),
» more

UniProtKB/Swiss-Prot
False negative sequences		 40 sequences 

ASH1_CANAL  (Q5A5Q6), BRG1_CANAL  (Q59LY1), EGL18_CAEEL (G5EGF4),
» more

PDB
[Detailed view]		 28 PDB

1GAT; 1GAU; 1GNF; 1Y0J; 2GAT; 2L6Y; 2L6Z; 2M9W; 2VUS; 2VUT; 2VUU; 3DFV;
» more