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| ExPASy molecular biology server | http://www.expasy.org/ |
| ExPASy FTP server | ftp://ftp.expasy.org/ |
| Databases | |
| UniProt Knowledgebase | http://www.expasy.org/sprot/ |
| to a specific UniProt Knowledgebase (Swiss-Prot or TrEMBL) entry | http://www.uniprot.org/uniprot/accession number(AC) or entry name, example: http://www.uniprot.org/uniprot/P01308 |
| to a UniProt Knowledgebase entry in raw text format | http://www.uniprot.org/uniprot/accession number(AC) or entry name.txt, example: http://www.uniprot.org/uniprot/P01308.txt |
| to a UniProt Knowledgebase entry in fasta format | http://www.expasy.org/uniprot/accession number(AC) or entry name.fasta, example: http://www.uniprot.org/uniprot/P01308.fasta |
| Create your own link to a specific UniProt Knowledgebase data set, corresponding to your criteria for protein name, gene name and/or organism | http://www.uniprot.org/ |
| to a UniProtKB/Swiss-Prot query by keyword | http://www.uniprot.org/uniprot/?query=keyword:keyword reviewed:yes, example: http://www.uniprot.org/uniprot/?query=keyword:"Calcium channel" reviewed:yes |
| to a UniProtKB query by keyword | http://www.uniprot.org/uniprot/?query=keyword:keyword, example: http://www.uniprot.org/uniprot/?query=keyword:"Calcium channel" |
| to a UniProtKB/Swiss-Prot query by author name | http://www.uniprot.org/uniprot/?query=author name reviewed:yes, example: http://www.uniprot.org/uniprot/?query=author:"Kaufman%20J." reviewed:yes |
| to a UniProtKB query by author name | http://www.uniprot.org/uniprot/?query=author:author name, example: http://www.uniprot.org/uniprot/?query="Kaufman%20J". |
| to a UniProtKB query by protein_id | http://www.uniprot.org/uniprot/?query="embl protein_id", example: http://www.uniprot.org/uniprot/?query="embl CAA32536" |
| to the results (computed on the fly) of a BLAST similarity search of a UniProtKB entry against UniProtKB | http://www.expasy.org/cgi-bin/blast.pl?sequence=accession number(AC), example: http://www.expasy.org/cgi-bin/blast.pl?sequence=P04406 |
| to a random UniProtKB/Swiss-Prot entry | http://www.expasy.org/cgi-bin/get-random-entry.pl?S |
| to a random UniProtKB/TrEMBL entry | http://www.expasy.org/cgi-bin/get-random-entry.pl?T |
| to a random UniProtKB entry | http://www.expasy.org/cgi-bin/get-random-entry.pl?ST |
| retrieving a list of UniProtKB entries | http://www.expasy.org/sprot/sprot-retrieve-list.html |
| Swiss-Prot documentation page | http://www.expasy.org/sprot/sp-docu.html |
| Swiss-Shop | http://www.expasy.org/swiss-shop/ |
| FTP: Swiss-Prot | ftp://ftp.expasy.org/databases/swiss-prot/ |
| FTP: UniProt Knowledgebase (Swiss-Prot + TrEMBL) | ftp://ftp.expasy.org/databases/uniprot/current_release/knowledgebase/ |
| PROSITE | http://www.expasy.org/prosite/ |
| to a specific PROSITE documentation entry | http://www.expasy.org/cgi-bin/get-prodoc-entry?PDOC????? , example: http://www.expasy.org/cgi-bin/get-prodoc-entry?PDOC00314 |
| to the user-friendly NiceSite View of a PROSITE documentation entry | http://www.expasy.org/prosite/PDOC?????, example: http://www.expasy.org/prosite/PDOC00314 |
| to a specific PROSITE pattern or profile entry | http://www.expasy.org/cgi-bin/get-prosite-entry?PS????? , example: http://www.expasy.org/cgi-bin/get-prosite-entry?PS00365 |
| to the user-friendly NiceSite View of a PROSITE entry | http://www.expasy.org/prosite/PS?????, example: http://www.expasy.org/prosite/PS00365 |
| FTP | ftp://ftp.expasy.org/databases/prosite/ |
| HAMAP | http://www.expasy.org/sprot/hamap/ |
| to a specific HAMAP family rule | http://www.expasy.org/unirules/MF_????? , example: http://www.expasy.org/unirules/MF_00163 |
| to the description of an complete microbial genome | http://www.expasy.org/sprot/hamap/organism-code.html, example: http://www.expasy.org/sprot/hamap/ECOLI.html |
| SWISS-2DPAGE | http://www.expasy.org/ch2d/ |
| to a specific SWISS-2DPAGE protein entry | http://www.expasy.org/swiss-2dpage/accession number(AC) or entry name, example: http://www.expasy.org/swiss-2dpage/P01009 |
| to a SWISS-2DPAGE protein entry in raw text format | http://www.expasy.org/swiss-2dpage/format=raw&extract&ac=accession number(AC) or entry name, example: http://www.expasy.org/swiss-2dpage/format=raw&extract&ac=P01009 |
| to a specific SWISS-2DPAGE spot | http://www.expasy.org/swiss-2dpage/spot=SWISS-2DPAGE spot serial number, example: http://www.expasy.org/swiss-2dpage/spot=2D-0017PD |
| to retrieve the protein list identified on a SWISS-2DPAGE reference map | http://www.expasy.org/swiss-2dpage/map=reference map name, example: http://www.expasy.org/swiss-2dpage/map=LIVER_HUMAN |
| to the graphical interface of a specific SWISS-2DPAGE reference map | http://www.expasy.org/swiss-2dpage/viewer&ac=all&map=reference map name, example: http://www.expasy.org/swiss-2dpage/viewer&ac=all&map=LIVER_HUMAN |
| FTP | ftp://ftp.expasy.org/databases/swiss-2dpage/ |
| SWISS-MODEL Repository | http://swissmodel.expasy.org/repository/ |
| ENZYME | http://www.expasy.org/enzyme/ |
| to a specific ENZYME entry or an ENZYME class | http://www.expasy.org/enzyme/EC number, examples:
http://www.expasy.org/enzyme/1.1.1.3 http://www.expasy.org/enzyme/1.1.-.- |
| to a specific ENZYME entry in raw text format | http://www.expasy.org/enzyme/EC number.txt, example:
http://www.expasy.org/enzyme/1.1.1.3.txt |
| Tools and software packages | |
| The ExPASy Proteomics Tools | http://www.expasy.org/tools/ | Protein identification and characterization |
|---|---|
| AACompIdent | http://www.expasy.org/tools/aacomp/ |
| AACompSim | http://www.expasy.org/tools/aacsim/ |
| MultiIdent | http://www.expasy.org/tools/multiident/ |
| Aldente | http://www.expasy.org/tools/aldente/ |
| TagIdent | http://www.expasy.org/tools/tagident.html |
| FindMod | http://www.expasy.org/tools/findmod/ |
| GlycoMod | http://www.expasy.org/tools/glycomod/ |
| FindPept | http://www.expasy.org/tools/findpept.html |
| PeptideMass | http://www.expasy.org/tools/peptide-mass.html |
| PeptideCutter | http://www.expasy.org/tools/peptidecutter/ |
| Compute pI/Mw | http://www.expasy.org/tools/pi_tool.html |
| Pattern and profile searches | |
| ScanProsite | http://www.expasy.org/tools/scanprosite/ |
| Primary structure analysis | |
| ProtParam | http://www.expasy.org/tools/protparam.html |
| ProtScale | http://www.expasy.org/tools/protscale.html |
| Tertiary structure | |
| Swiss-PdbViewer | http://www.expasy.org/spdbv/mainpage.html |
| SWISS-MODEL | http://www.expasy.org/swissmod/SWISS-MODEL.html |
| Post-translational modification prediction | |
| Myristoylator | http://www.expasy.org/tools/myristoylator/ |
| The Sulfinator | http://www.expasy.org/tools/sulfinator/ |
| Alignment | |
| SIM | http://www.expasy.org/tools/sim-prot.html |
| LALNVIEW | http://www.expasy.org/tools/lalnview.html |
| Other tools | |
| ImageMaster / Melanie | http://www.expasy.org/melanie/ |
| Make2ddb | http://www.expasy.org/ch2d/make2ddb.html |
| Biochemical Pathways | http://www.expasy.org/tools/pathways/ |
| Translate | http://www.expasy.org/tools/dna.html |
| RandSeq | http://www.expasy.org/tools/randseq.html |
| Links to other molecular biology resources | |
| ExPASy's Life Sciences Directory | http://www.expasy.org/links.html |
| BioHunt | http://www.expasy.org/BioHunt/ |
| ExpasyIndex | http://www.expasy.org/ExpasyHunt/ |
| 2DHunt | http://www.expasy.org/ch2d/2DHunt/ |
| WORLD-2DPAGE List | http://www.expasy.org/ch2d/2d-index.html |
| World-2DPAGE Portal | http://www.expasy.org/world-2dpage/ |
| Documentation | |
| What's New on ExPASy | http://www.expasy.org/history.html |
| ExPASy sitemap | http://www.expasy.org/sitemap.html |
| SWISS-FLASH electronic bulletins | http://www.expasy.org/swiss-flash/ |
| Complete table of available documents | http://www.expasy.org/doc.html |
| Miscellaneous | |
| Swiss-Quiz | http://www.expasy.org/swiss-quiz/ |
| Swiss-Jokes | http://www.expasy.org/cgi-bin/sw-jokes.pl |
| ExPASy Home page |
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